Variant summary
Mnemonic |
Gene |
Chr-pos-ref-alt |
Variant HGVS |
Protein HGVS |
# publications |
# cases |
G94A |
SOD1 |
21-33039612-G-C |
NM_000454.4:c.281G>C |
NP_000445.1:p.G94A |
4 |
0 |
External database IDs
Population frequencies
The minor allele frequency of this variant in people with ALS from Project MinE data freeze 2 is 0.0000765
This variant is not found in people without ALS in Project MinE data freeze 2
This variant has not been found in the gnomaAD v2.1.1 dataset for people with non-neurological conditions
Pathogenicity predictions
The most severe consequence is
Ensembl Variant Effect Predictor
Transcript ID |
Polyphen score |
Polyphen prediction |
SIFT score |
SIFT prediction |
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Publications
Tomkins., J , Usher., P , Slade., JY , Ince., PG , Curtis., A , Bushby., K , Shaw., PJ (1998) Novel insertion in the KSP region of the neurofilament heavy gene in amyotrophic lateral sclerosis (ALS).
9875737
Abstract
The abnormal assembly and accumulation of neurofilaments (NF) in the perikarya and proximal axons of motor neurones is a characteristic of ALS. Deletions in the KSP repeat region of the NF-H gene have previously been reported in seven patients with sporadic ALS. Here we report the identification of a novel 84 bp insertion in the NF-H gene. This leads to an extra four KSP repeat elements in a highly conserved repetitive region of the gene. Although neurofilament mutations are only associated with a very small proportion of ALS cases, this insertion provides further support of a role for neurofilaments in the pathogenesis of ALS.
Rosen., DR , Siddique., T , Patterson., D , Figlewicz., DA , Sapp., P , Hentati., A , Donaldson., D , Goto., J , O'Regan., JP , Deng., HX (1993) Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis.
8446170
Abstract
Amyotrophic lateral sclerosis (ALS) is a degenerative disorder of motor neurons in the cortex, brainstem and spinal cord. Its cause is unknown and it is uniformly fatal, typically within five years. About 10% of cases are inherited as an autosomal dominant trait, with high penetrance after the sixth decade. In most instances, sporadic and autosomal dominant familial ALS (FALS) are clinically similar. We have previously shown that in some but not all FALS pedigrees the disease is linked to a genetic defect on chromosome 21q (refs 8, 9). Here we report tight genetic linkage between FALS and a gene that encodes a cytosolic, Cu/Zn-binding superoxide dismutase (SOD1), a homodimeric metalloenzyme that catalyzes the dismutation of the toxic superoxide anion O2.- to O2 and H2O2 (ref. 10). Given this linkage and the potential role of free radical toxicity in other neurodenegerative disorders, we investigated SOD1 as a candidate gene in FALS. We identified 11 different SOD1 missense mutations in 13 different FALS families.
Millecamps., S , Salachas., F , Cazeneuve., C , Gordon., P , Bricka., B , Camuzat., A , Guillot-Noël., L , Russaouen., O , Bruneteau., G , Pradat., PF , Le Forestier., N , Vandenberghe., N , Danel-Brunaud., V , Guy., N , Thauvin-Robinet., C , Lacomblez., L , Couratier., P , Hannequin., D , Seilhean., D , Le Ber., I , Corcia., P , Camu., W , Brice., A , Rouleau., G , LeGuern., E , Meininger., V (2010) SOD1, ANG, VAPB, TARDBP, and FUS mutations in familial amyotrophic lateral sclerosis: genotype-phenotype correlations.
20577002
Abstract
Mutations in SOD1, ANG, VAPB, TARDBP and FUS genes have been identified in amyotrophic lateral sclerosis (ALS). The relative contributions of the different mutations to ALS were estimated by systematically screening a cohort of 162 families enrolled in France and 500 controls (1000 chromosomes) using molecular analysis techniques and performing phenotype-genotype correlations. 31 pathogenic missense mutations were found in 36 patients (20 SOD1, 1 ANG, 1 VAPB, 7 TARDBP and 7 FUS). Surprisingly two FUS mutation carriers also harboured ANG variants. One family of Japanese origin with the P56S VAPB mutation was identified. Seven novel mutations (three in SOD1, two in TARDBP, two in FUS) were found. None of them was detected in controls. Segregation of detected mutations with the disease was confirmed in 11 families including five pedigrees carrying the novel mutations. Clinical comparison of SOD1, TARDBP, FUS and other familial ALS patients (with no mutation in the screened genes) revealed differences in site of onset (predominantly lower limbs for SOD1 and upper limbs for TARDBP mutations), age of onset (younger with FUS mutations), and in lifespan (shorter for FUS carriers). One third of SOD1 patients survived more than 7 years: these patients had earlier disease onset than those presenting with a more typical course. Differences were also observed among FUS mutations, with the R521H FUS mutation being associated with longer disease duration. This study identifies new genetic associations with ALS and provides phenotype-genotype correlations with both previously reported and novel mutations.
Deng., HX , Tainer., JA , Mitsumoto., H , Ohnishi., A , He., X , Hung., WY , Zhao., Y , Juneja., T , Hentati., A , Siddique., T (1995) Two novel SOD1 mutations in patients with familial amyotrophic lateral sclerosis.
7655471
Abstract